Package: coda.base 0.5.5

Marc Comas-Cufí

coda.base: A Basic Set of Functions for Compositional Data Analysis

A minimum set of functions to perform compositional data analysis using the log-ratio approach introduced by John Aitchison (1982). Main functions have been implemented in c++ for better performance.

Authors:Marc Comas-Cufí [aut, cre]

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coda.base.pdf |coda.base.html✨
coda.base/json (API)
NEWS

# Install 'coda.base' in R:

install.packages('coda.base', repos = c('https://mcomas.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mcomas/coda.base/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3

Datasets:

alimentation - Food consumption in European countries
arctic_lake - Arctic lake sediments at different depths
blood_mn - The MN blood system
bmi_activity - Physical activity and body mass index
eurostat_employment - Employment distribution in EUROSTAT countries
foraminiferals - Paleocological compositions
house_expend - Household expenditures
household_budget - Household budget patterns
mammals_milk - Mammal’s milk
milk_cows - Milk composition study
montana - Concentration of minor elements in carbon ashes
parliament2017 - Results of catalan parliament elections in 2017 by regions.
petrafm - Calc-alkaline and tholeiitic volcanic rocks
pollen - Pollen composition in fossils
pottery - Chemical compositions of Romano-British pottery
serprot - Serum proteins
statistitian_time - A statistician’s time budget
waste - The waste composition in Catalonia
weibo_hotels - Hotel posts in social media

On CRAN:

26 exports 7 stars 6.25 score 4 dependencies 126 mentions 69 scripts 525 downloads

Last updated 10 months agofrom:1ec591f0b0. Checks:OK: 1 NOTE: 8. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 08 2024
R-4.5-win-x86_64	NOTE	Sep 08 2024
R-4.5-linux-x86_64	NOTE	Sep 08 2024
R-4.4-win-x86_64	NOTE	Sep 08 2024
R-4.4-mac-x86_64	NOTE	Sep 08 2024
R-4.4-mac-aarch64	NOTE	Sep 08 2024
R-4.3-win-x86_64	NOTE	Sep 08 2024
R-4.3-mac-x86_64	NOTE	Sep 08 2024
R-4.3-mac-aarch64	NOTE	Sep 08 2024

Exports:alr_basis alr_c basis cbalance_approx cdp_basis cdp_partition center clr_basis clr_c comp composition coord coordinates dist gmean ilr_basis ilr_c olr_basis olr_c pairwise_basis pb_basis pc_basis plot_balance read_cdp sbp_basis variation_array

Dependencies:lattice Matrix Rcpp RcppArmadillo

coda.base features' enumeration

Marc Comas-Cufí

Rendered fromfeatures.Rmdusingknitr::rmarkdownon Sep 08 2024.

Last update: 2023-11-25
Started: 2022-06-30

Principal Balances

Marc Comas-Cufí

Rendered fromprincipal_balances.Rmdusingknitr::rmarkdownon Sep 08 2024.

Last update: 2023-11-25
Started: 2020-06-03

Working with log-ratio coordinates in coda.base

Marc Comas-Cufí

Rendered fromcoordinates.Rmdusingknitr::rmarkdownon Sep 08 2024.

Last update: 2023-11-25
Started: 2018-12-23

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Food consumption in European countries	alimentation
Additive log-ratio basis	alr_basis
Arctic lake sediments at different depths	arctic_lake
Coordinates basis	basis
The MN blood system	blood_mn
Physical activity and body mass index	bmi_activity
Balance generated from the first canonical correlation component	cbalance_approx
Isometric log-ratio basis based on canonical correlations	cc_basis
Isometric log-ratio basis based on Balances.	cdp_basis
CoDaPack's default binary partition	cdp_partition
Dataset center	center
Centered log-ratio basis	clr_basis
coda.base	coda.base-package coda.base
Get composition from coordinates w.r.t. an specific basis	comp composition
Get coordinates from compositions w.r.t. an specific basis	alr_c clr_c coord coordinates ilr_c olr_c
Distance Matrix Computation (including Aitchison distance)	dist
Employment distribution in EUROSTAT countries	eurostat_employment
Paleocological compositions	foraminiferals
Geometric Mean	gmean
Household expenditures	house_expend
Household budget patterns	household_budget
Isometric/Orthonormal log-ratio basis for log-transformed compositions.	ilr_basis olr_basis
Mammal’s milk	mammals_milk
Milk composition study	milk_cows
Concentration of minor elements in carbon ashes	montana
Pairwise log-ratio generator system	pairwise_basis
Results of catalan parliament elections in 2017 by regions.	parliament2017
Isometric log-ratio basis based on Principal Balances.	pb_basis
Isometric log-ratio basis based on Principal Components.	pc_basis
Calc-alkaline and tholeiitic volcanic rocks	petrafm
Plot a balance	plot_balance
Pollen composition in fossils	pollen
Chemical compositions of Romano-British pottery	pottery
Printing coordinates	print.coda
Import data from a codapack workspace	read_cdp
Isometric log-ratio basis based on Balances	sbp_basis
Serum proteins	serprot
A statistician’s time budget	statistitian_time
Variation array is returned.	variation_array
The waste composition in Catalonia	waste
Hotel posts in social media	weibo_hotels

Package: coda.base 0.5.5

coda.base: A Basic Set of Functions for Compositional Data Analysis

coda.base features' enumeration

Principal Balances

Working with log-ratio coordinates in coda.base

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)